Welcome to the Sims-lab pipelines documentation!

The Sims-lab pipelines use ruffus and cgat-core to write and execute bioinformatics workflows locally or on high-performance computing (HPC) clusters.

Check out the Usage section for further information, including how to Installation the project.

Note

This project is under active development.

Contents

• Usage
  • Installation

How-to Guides

These guides will help walk you through specific use cases related to developing the templates of pipelines themselves.

• Using pipelines: Using production pipelines

• Developing pipelines: Working with the template pipeline | Developing production pipelines | More guides on the topic